Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX251352: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-223599' containing sample 'Escherichia coli HVH 90 (4-3191362)'
2 ILLUMINA (Illumina HiSeq 2000) runs: 4.1M spots, 836.5M bases, 421.9Mb downloads

UUID: f97e17fc-b557-4622-ac54-018f1b2a3d10

Design: Illumina sequencing of Escherichia coli HVH 90 (4-3191362) via random selection

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186112 • SRP019607 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli HVH 90 (4-3191362)

SAMN01885739 • SRS402232 • All experiments • All runs

Organism: Escherichia coli HVH 90 (4-3191362)

Library:

Name: Pond-223599

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 290813.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:3VYBD

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30692

research_project: RP-192

root_sample_id: SM-2TCYR

sample_id: SM-3VYBD

work_request: 35213

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-03-08 22:34:25.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 4.1M spots, 836.5M bases, 421.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR785527	2,069,568	418.1M	211Mb	2013-03-18
SRR785528	2,071,690	418.5M	210.9Mb	2013-03-18

ID:: 351276

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